Individuals who have taken the Haplogroup R Subclade test may benefit from selectively testing newly discovered SNPs that are relevant to their particular subclade.
How should I proceed with stand alone SNP testing?
Begin by reading this tutorial. This tutorial provdes an overview of the stand alone SNPs available for individuals who have taken the R subclade test. If you are interested in ordering a stand alone SNP test, we recommend that you read this entire tutorial carefully to understand which test is best for your situation. The order link is at the bottom of this tutorial.
Which stand alone SNP tests are available?
The following stand alone SNPs are now available for individuals who have taken the R subclade test:
L23/S141 - R1b1b2a
L48/S162 - R1b1b2a1a4
L45 - R1b1b2a1a4a
L2/S139 - R1b1b2a1b4c
L20/S144 - R1b1b2a1b4c1
L21/S145 - R1b1b2a1b6
The following table illustrates the phylogenetic relationship between the stand alone SNPs in relation to the SNPs tested in the R Subclade test panel:
|
Subclade |
Y- SNP Mutations |
|
R1b |
M343
(2004) |
|
|
|
|
|
|
|
|
|
|
R1b1 |
M343
(2004) |
P25
(2000) |
|
|
|
|
|
|
|
|
|
R1b1a |
M343
(2004) |
P25
(2000) |
M18
(1997) |
|
|
|
|
|
|
|
|
R1b1b |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
|
|
|
|
|
|
|
|
R1b1b1 |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M73
(2000) |
|
|
|
|
|
|
|
R1b1b2 |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
|
|
|
|
|
|
|
R1b1b2a (new) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
|
|
|
|
|
|
R1b1b2a1 (previously R1b1b2a) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
|
|
|
|
|
R1b1b2a1a
(previously R1b1b2a1) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S21
(Dec 2006) |
|
|
|
|
R1b1b2a1a1 (previously R1b1b2a1a) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S21
(Dec 2006) |
S29
(2006) |
|
|
|
R1b1b2a1a2 (previously R1b1b2a1b) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S21
(Dec 2006) |
P107
(2006) |
|
|
|
R1b1b2a1a3 (previously R1b1b2a1c) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S21
(Dec 2006) |
S26
(2006) |
|
|
|
R1b1b2a1a4 (New) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S21
(Dec 2006) |
L48
(Nov 2008) |
|
|
|
R1b1b2a1a4a (New) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S21
(Dec 2006) |
L48
(Nov 2008) |
L45
(Nov 2008) |
|
|
R1b1b2a1b (previously R1b1b2a2) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
|
|
|
|
R1b1b2a1b1 (previously R1b1b2a2b) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
M65
(2000) |
|
|
|
R1b1b2a1b2 (previously R1b1b2a2c) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
M153
(2000) |
|
|
|
R1b1b2a1b3 (previously R1b1b2a2d) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
M167
(2000) |
|
|
|
R1b1b2a1b4 (previously R1b1b2a2g) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
S28
(2006) |
|
|
|
R1b1b2a1b4a (previously R1b1b2a2g1) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
S28
(2006) |
M126
(2000) |
|
|
R1b1b2a1b4b (previously R1b1b2a2g2) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
S28
(2006) |
M160
(2000) |
|
|
R1b1b2a1b4c (New) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
S28
(2006) |
L2
(Sep 2008) |
|
|
R1b1b2a1b4c1 (New) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
S28
(2006) |
L2
(Sep 2008) |
L20
(Nov 2008) |
|
R1b1b2a1b6 (New) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
L21
(Nov 2008) |
|
|
|
R1b1b2a1b6a (previously R1b1b2a2a) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
L21
(Nov 2008) |
M37
(2000) |
|
|
R1b1b2a1b6b (previously R1b1b2a2e) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
L21
(Nov 2008) |
M222
(1999) |
|
|
R1b1b2a1b6c (previously R1b1b2a2f) |
M343
(2004) |
P25
(2000) |
P297
(May 2008) |
M269
(2002) |
L23
(Nov 2008) |
S127
(May 2008) |
S116
(May 2008) |
L21
(Nov 2008) |
P66
(2005) |
|
|
R1b1c |
M343
(2004) |
P25
(2000) |
M335
(2004) |
|
|
|
|
|
|
|
Who is qualified to order these stand alone SNPs?
L23/S141
Prerequisites: Individuals who have taken the R Subclade test and confirmed positive for M269.
|
|
Subclades
(new nomenclature) |
Subclades
(old nomenclature) |
Terminal SNP |
Recommended? |
|
1 |
R1b1b2 |
R1b1b2 |
M269 |
Qualified, recommended, may provide further resolution |
|
2 |
R1b1b2a1 |
R1b1b2a |
S127 |
Qualified, not likely to change confirmed subclade |
|
3 |
R1b1b2a1a |
R1b1b2a1 |
S21 (=U106=M405) |
Qualified, not likely to change confirmed subclade |
|
4 |
R1b1b2a1a1 |
R1b1b2a1a |
S29 (=U198=M467) |
Qualified, not likely to change confirmed subclade |
|
5 |
R1b1b2a1a2 |
R1b1b2a1b |
P107 |
Qualified, not likely to change confirmed subclade |
|
6 |
R1b1b2a1a3 |
R1b1b2a1c |
S26 |
Qualified, not likely to change confirmed subclade |
|
7 |
R1b1b2a1b |
R1b1b2a2 |
S116 |
Qualified, not likely to change confirmed subclade |
|
8 |
R1b1b2a1b1 |
R1b1b2a2b |
M65 |
Qualified, not likely to change confirmed subclade |
|
9 |
R1b1b2a1b2 |
R1b1b2a2c |
M153 |
Qualified, not likely to change confirmed subclade |
|
10 |
R1b1b2a1b3 |
R1b1b2a2d |
M167 |
Qualified, not likely to change confirmed subclade |
|
11 |
R1b1b2a1b4 |
R1b1b2a2g |
S28 (=U152) |
Qualified, not likely to change confirmed subclade |
|
12 |
R1b1b2a1b4a |
R1b1b2a2g1 |
M126 |
Qualified, not likely to change confirmed subclade |
|
13 |
R1b1b2a1b4b |
R1b1b2a2g2 |
M160 |
Qualified, not likely to change confirmed subclade |
|
14 |
R1b1b2a1b6a |
R1b1b2a2a |
M37 |
Qualified, not likely to change confirmed subclade |
|
15 |
R1b1b2a1b6b |
R1b1b2a2e |
M222 |
Qualified, not likely to change confirmed subclade |
|
16 |
R1b1b2a1b6c |
R1b1b2a2f |
P66 |
Qualified, not likely to change confirmed subclade |
L48/S162
Prerequisites: Individuals who have taken the R Subclade test and confirmed positive for S21 but negative for S29, P107 and S26.
|
|
Subclades
(new nomenclature) |
Subclades
(old nomenclature) |
Terminal SNP |
Recommended? |
|
1 |
R1b1b2a1a |
R1b1b2a1 |
S21 (=U106=M405) |
Qualified, recommended, may provide further resolution |
L45
Prerequisites: Individuals who have taken the R Subclade test and L48 stand alone test and confirmed positive for L48.
|
|
Subclades
(new nomenclature) |
Subclades
(old nomenclature) |
Terminal SNP |
Recommended? |
|
1 |
R1b1b2a1a4 |
|
L48 (=S162) |
Qualified, recommended, may provide further resolution |
L2/S139
Prerequisites: Individuals who have taken the R Subclade test and confirmed positive for S28 but negative for M126 and M160.
|
|
Subclades
(new nomenclature) |
Subclades
(old nomenclature) |
Terminal SNP |
Recommended? |
|
1 |
R1b1b2a1b4 |
R1b1b2a2g |
S28 (=U152) |
Qualified, recommended, may provide further resolution |
L20/S144
Prerequisites: Individuals who have taken the R Subclade test and L2 stand alone test and confirmed positive for L2.
|
|
Subclades
(new nomenclature) |
Subclades
(old nomenclature) |
Terminal SNP |
Recommended? |
|
1 |
R1b1b2a1b4c |
|
L2 (=S139) |
Qualified, recommended, may provide further resolution |
L21/S145
Prerequisites: Individuals who have taken the R Subclade test and confirmed positive for S116 but negative for M65, M153, M167, S28.
|
|
Subclades
(new nomenclature) |
Subclades
(old nomenclature) |
Terminal SNP |
Recommended? |
|
1 |
R1b1b2a1b |
R1b1b2a2 |
S116 |
Qualified, recommended, may provide further resolution |
How much do the stand alone tests cost?
The stand alone tests are $39 per SNP.
How do I order these stand alone SNP tests?
If you qualify for any of these stand alone tests, an order link will automatically appear in your account. If you do not see these tests in your account or in the list of available tests in the online order forms, it means that you do not qualify for this upgrade.
Need to cite this tutorial in your essay, paper or website? Use the following format:
Stand alone SNPs for R1b individuals. Genebase Tutorials. Retrieved February 9, 2010, from http://www.genebase.com/tutorial/item.php?tuId=28
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